mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCGGCGGGAGCCCCGGGGGG GTCCGGTGAGCTCTCGCTGGCCC AACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGGGAGGGCTCTTTTCTTTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA GTCGGTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGATGGCCTCCGTTGCCCTCAGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGGCGGAGATGGGCGCCGCGAGGCGTCCAGTGCGGTAACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGGGAGGGCTCTTTTCTTTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAGGGTGTGAATCTCGCGCCGGGCCGTACCCATATGCGCAGGGGGTCTGCAAGGTGAACAGCCTGTGGCGTGTTGGGACAATGTCGGTAAGGGAAGTCGGTTTGCCGTATCCGTAGCTTCGGGGTGAGGATGGGGTGTA 4 2 5' arm Canis_lupus_familiaris mirnest 100 100 -80.3 ...........(((((((...((((((((((((.(((((....(((((((((((((.((..(((((.....)))))...))(((....))).))))))))))))).((((((((((.((...))..)))))).)))))))))...)))))))))))).........))))))).... (-80.3)