mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGGCCTGGCCGCGGGCGGAG CTTCCCGCAGCCGGGCGCCTCC CAACGGCTTCCCGCAGCCGGGCGCCTCCTCCGGGGCCTGGCCGCGGGCGGAGGAGGAACTGC GGGTTTGTCTCGCAGGGCCGGGGCCGGCGGCTCCGGGGCCAGCCGCCATGTCCTCCACGGTGAACAACGGGGCGGCGAGCATGCCGTCCCCACCGGACGCGGCCAACGGCTTCCCGCAGCCGGGCGCCTCCTCCGGGGCCTGGCCGCGGGCGGAGGAGGAACTGCGCGCCGCCGAGCCGGGCCTGGTGAAGCGCGCGCACCGCGAGATCCTGGACCACGAGCGCAAGCGGCGCGTGGAGCTCAAGTGCATGGAGTTGCAAGAGATGATGGAGGAGCAGGGGTACTCAGAGGAGGAGACCCGGCAAAAGGTCAGGACTTTCCGGCAGATGCTGATGGAGAAGGAGGGCATGCTCACCAGGGAGGACCGGCCTGGGGGCCACATCGTGGCGGAGACCCCGCGGCTGCTCGAGGGCGCGGAACCGGGCCTGGAGTACGCGCCCTTGGACGAGGACGACGGCCCGGTGGACTGCGACTGCCCGGTCGCCTGCTACCGCGGGCACCGGGGGTACAGGACCCAGCACTGGTCCAGCAGCTCGGCGTCGCCCCCTCCCAAGAAGAAGAAGAAAAAGAAAGGCGGCCACCGGAGAAGCCGCAAAAAGAGGAGAGTGGACTCGGAGTGCAGCTGTGGGAGCTCCTCACCTCTGCGCAAGAAGAAGAAGAGTGTGAAGAAGCACCGTAGAGACAGGTCTGATTCTGGGTCCCGGAGGAAGAGACGACACAGATCTCGAAGCCCC 4 1 3' arm Canis_lupus_familiaris mirnest 100 100 -28.8 ......((.(((((.(((((((.(((.....)))))))))).))))).))............ (-28.8)