mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT TGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTTCTCCCTCGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG ACCCGTTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTTCTCCCTCGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGGTGGGGTCCGCGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGTCCGGCCGTGCCGGCGGCCCGGCGGATCTTTTCCCGCCCCCCGTTCCTCCCGACCCCTCCACCCGNCCTCCCTCCCCCGCCGCCCCCCCTCCCCGGAGGGGGGCTCCGGCGGGTGCGGGGGTGGGCGGGCGGGGCCGGGGGT 3 2 3' arm Canis_lupus_familiaris mirnest SSU_rRNA_eukarya 1e-56 mmu-mir-5105 1e-22 -60.9 ..((((....(((((((((....((((((((.(((....(((((((.....((..(((((.(((.(((...)))..)))......)))))..))....))))))))))))))))))...)))))))))....)))). (-60.9)