mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT TGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGTCTTTTTCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG TATTTTTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGTCTTTTTCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGGTGGGGTCCGCGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGGTCCGGCCGTGCCGGCGGCCCGGCGGATCTTTCCCGCCCCCCGTTCCTCCCGACCCCTCCACCCGCCCTCCCTCCCCCGCCGCCCCCCCTCCCCGGAGGGGGGCTCCGGCGGGTGCGGGGGTGGGCGGGCGGNGCCGGGGGTGGGGTCGGCGGGGGACCGCCCCCCGGCCGGCGACCGGCCGNCGCCGGGCGCATTTNCACCGCGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGAAGGCCGGCGGGGAAG 3 2 3' arm Canis_lupus_familiaris mirnest SSU_rRNA_eukarya 4e-57 mmu-mir-5105 6e-34 -62.8 ..((((....(((((((((....((((((((.(((....(((((((.(((.(((((((.(((.(((...)))..))).)))...))))....))).))))))))))))))))))...)))))))))....)))). (-62.8)