mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTAAGGGCTGGGTCGGTCG GCCGGATCCGGTACTTCGGGAT GGCAAGGCCGGATCCGGTACTTCGGGATAAGGATTGGCTCTAAGGGCTGGGTCGGTCGGGC GCTGTGAGAGTAGGAGGGCCGCTGCGGTGAGCCTTGAAGCCTAGGGCGCGGGCCCGGGTGGAGCCGCCGCAGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAACAGCAGTTGAACATGGGTCAGTCGGTCCTGAGAGAGGGGCGAGCGCCGTTTTTTTGGACGGGCGATGGCCTCCGTTGCCCTCAGCCGATCGAAAGGGAGTCGGGTTCACATCCCCGAATCCGGAGTGGCGGAGATGGGCGCCGCGAGGCGTCCAGTGCGGTAACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGANAATCCGGGGGAGAGGGTGTAAATCTCGCGCCGGGCCGTACCCATATNCGCAGCAGGTCTCCAAGGTGAACAGCCTTTGGCATGTTGGAACAATGTANGTAAGGGGAAGTCGGCAAGGCCGGATCCGGTACTTCGGGATAAGGATTGGCTCTAAGGGCTGGGTCGGTCGGGCTG 3 1 3' arm Canis_lupus_familiaris mirnest SSU_rRNA_eukarya 0.00005 bta-mir-2487 0.0006 -22.3 .((..(((((.(((((((.(((.(((.(((...))).))).))).))))))))))))..)) (-22.3)