mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATAAGACGAACAAAAGGTTTGT AAGCTTTTTGCTCGCGTTATGT CCCAGCTCCTTCTCCTCTCAGGGAAGCTTTTTGCTCGCGTTATGTTTCTCATCCGAATATAAGACGAACAAAAGGTTTGTCTGAGGGTAGAGTGCTCCCA GTACGAGGAGGAGACCGAGGCCAAGGCCGAGCTGCAGCGCGTCCTGTCCAAGGCCAACTCGGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGATGCCATCCAGAGGACTGAGGAACTCGAGGAGGCCAAGTGAGTCCCAGGCGGCCCACCTCTAGCTGAGGCCCATCTGCAGGCAAGACACAGCCCAGCCCAAGGCTGGGAAGACTCCTCACTGGGTATGGATGCTTGGCCAGGTTTGGACAACACAGGAGAACCCTGTCCAGGGCCCCAGCTCCTTCTCCTCTCAGGGAAGCTTTTTGCTCGCGTTATGTTTCTCATCCGAATATAAGACGAACAAAAGGTTTGTCTGAGGGTAGAGTGCTCCCACCAGGGGCAGGATGCTCTGGCAGAGGAAGTGGGGTGGGCTGCCAAAGCCCATGCCTCCTCCATGTCTGCAGCCTAGAGGCTGGCCCGGGGTCAGACCACCTGGAAGGCCCTCCTGGGTCCTGTTGGATCTTCATAGTGTGCCATCAAGACCCTCTTTGCCTACCTGGTTCTTAACCCCATGGGGCCTCTCCTCAGCTTCTCCACAACGCTTCTGAATTTTCAAGGATTGTTTTCTAGAACACTCACATTATTTCTCCTTGTCCAAACCTACACCCTCTATCCTCCCCACCTTCTCCCATCCTCCTGNNGCAGAAGAAGCTGGCCCAGAGGCTGCA 4 0 3' arm Canis_lupus_familiaris mirnest mir-208 7e-30 rno-mir-208b 5e-40 -33.2 ...(((...((((.((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).)))))))).)))).))).... (-33.2)