mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCTTTTTGCTCGCGTTATG TAAGACGAACAAAAGGTTTGT CAGCTCCTTCTCCTCTCAGGGAAGCTTTTTGCTCGCGTTATGTTTCTCATCCGAATATAAGACGAACAAAAGGTTTGTCTGAGGGTAGAGTGCTCC GTACGAGGAGGAGACCGAGGCCAAGGCCGAGCTGCAGCGCGTCCTGTCCAAGGCCAACTCGGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGATGCCATCCAGAGGACTGAGGAACTCGAGGAGGCCAAGTGAGTCCCAGGCGGCCCACCTCTAGCTGAGGCCCATCTGCAGGCAAGACACAGCCCAGCCCAAGGCTGGGAAGACTCCTCACTGGGTATGGATGCTTGGCCAGGTTTGGACAACACAGGAGAACCCTGTCCAGGGCCCCAGCTCCTTCTCCTCTCAGGGAAGCTTTTTGCTCGCGTTATGTTTCTCATCCGAATATAAGACGAACAAAAGGTTTGTCTGAGGGTAGAGTGCTCCCACCAGGGGCAGGATGCTCTGGCAGAGGAAGTGGGGTGGGCTGCCAAAGCCCATGCCTCCTCCATGTCTGCAGCCTAGAGGCTGGCCCGGGGTCAGACCACCTGGAAGGCCCTCCTGGGTCCTGTTGGATCTTCATAGTGTGCCATCAAGACCCTCTTTGCCTACCTGGTTCTTAACCCCATGGGGCCTCTCCTCAGCTTCTCCACAACGCTTCTGAATTTTCAAGGATTGTTTTCTAGAACACTCACATTATTTCTCCTTGTCCAAACCTACACCCTCTATCCTCCCCACCTTCTCCCATCCTCCTGNNGCAGAAGAAGCTGGCCCAGAGGCTGCA 3 0 5' arm Canis_lupus_familiaris mirnest mir-208 7e-30 rno-mir-208b 7e-39 -33.2 .(((...((((.((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).)))))))).)))).))).. (-33.2)