mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTTCTTCAGTGGCAAGCTTT AGCTGCCAGTTGAAGAACTGT CTCATCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCT TCGCGCACTGATTTGCTCCCTTACCCTCAGCAACCCCCCGCACCCAGGACCAGGAGCCTGTCCCTCCCACACCCTCATCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGTTGCCCTCTGCCCCTGGCTTCAAGGAGGAGGAGGAAGAGGAGAAGGAGCTGCTTTCCCCTTCATCTGGAAGGTGACAGAACTGGGGCTGGGAAGGTCTGAACAGCGGGAGTAATAATGCCATTTGGAAAAGGAAACCTTGTTCAGAGCCTTCAGCCAGACTGACCCAGCAAGAGAGAACAATTTTAGATTAGAGACTCTGGTTGGATGGGGGAATAGATGACTGTGATCACTCAAGGTTAGTTGGTCTACATTGATGTGACATGGCGAAGATAACAGGAGCAAAGAAAACTGTCTACCCCTTTACCCAGATGTCTTTCTTGGTCCTCCTCCTTTGTCTCCTTTTCTTGCCTACTGCCTTTCCAGGGAGGTGCTTAGTNACTTTATTCTTCAGGGAAAAGATCATACT 0 2 5' arm Canis_lupus_familiaris mirnest mir-22 9e-42 mmu-mir-22 8e-48 -35.6 .......(((.(((..((((((((((((((((((((.((((((....(((...))).))))))))))).))))))))))))))).))).)))....... (-35.6)