mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGTGATTATTCTCAGAGTTC ATTCTGAGAATAATCATCCGA GCAATCAACGATTTCGAGGGCATTCTGAGAATAATCATCCGAATGCAGCAGCCCGGGCGGGTGATTATTCTCAGAGTTCCCAAGGGAGCGTGGATCG CGTACAGGGCAATCAACGATTTCGAGGGCATTCTGAGAATAATCATCCGAATGCAGCAGCCCGGGCGGGTGATTATTCTCAGAGTTCCCAAGGGAGCGTGGATCGACCGGCGTAAAGTCGGAGCCTTACGATCTTTGTCCGCATGCTGAACATGTTGTGCACTCAGTGAGCCTGTGAAGACGTGGACAGAAGATCTGGTGTACGAAGCTGCACATCACGATCAGGGTTTCAATGTTATACTTTCCATTACGAGCTTCTGTCCGCTGGAGCGAGGATTATGAGAAATATCCTGTCCTTGATTGTAAAGAGAATTTCCTTCGTTGGGCTTTATGAACACGGTTGTCGCCCAACGTGTGGGAAGTGGGAGAGCGTGCGCTTTCGTCAAGTCTATTTTAGCTATACGAAGCGGTGCTTGTGGGGTTTTCGTCCTATCGGGTCTCATTGTCGATCCTGAACGAGATCGCAATTTTCATTGTAGTGTTTGCACGTCTAGCTGTTTTCAATTGTAGCGAGCAGCATCGCTTGAGCTTCTACTCGAACTCTTTTTCCCCGTTTGACCTGCAAGTCATTTGTGATTTACAAGTCAATGCAGCAAAGGATTTTTGGAGTTGCAATTATTTCAGTAAATCAGTTGTTCTTTTTGGATTGCAGATGTTCTACAAGCAAGCTAAGAAGGTGAATCAGTAATGCACCATTTTATAAATACATTGGCTGCCATTTGGGACTTTCCAGGTCCGTAA 1 0 3' arm Physcomitrella_patens mirnest 100 ppt-MIR1064 3e-50 -40.5 ...(((.(((.((((..(((.((((((((((((((((((((...((....)).....)))))))))))))))))))).)))..)))).))).))).. (-40.5)