mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATGGAGATGTCTTCAAGGTG TCGCAAGGGCATCTTTCAGATA CTTATCCAAGAGTCACAAAACAGCTGTACTACATGGAGATGTCTTCAAGGTGCAGAGATGAGATTTTAGGAAATCAAAGTTGTGAACCAAAATCTTGCATCGCAAGGGCATCTTTCAGATAGTCATTCAGCTGCTTTCGGCACTCAGCA GCCTTTTTTTNTAACTGATTTATTATATAATCCGAACACGTGCTTCAAGTCTGTTGTGGAATTGCATCAGGTCCCTGATTATACATCTGCTCACATCTTTCTTAGAAACAAGGGTATCTATATACTTGAACTGGTACCGATGAAATGCTAACCCATCAACAAAAGAATTATTCCGTGACTTCATGTGTCCTACACTATTCAACTGAGAAGAGAGTGCTTATCCAAGAGTCACAAAACAGCTGTACTACATGGAGATGTCTTCAAGGTGCAGAGATGAGATTTTAGGAAATCAAAGTTGTGAACCAAAATCTTGCATCGCAAGGGCATCTTTCAGATAGTCATTCAGCTGCTTTCGGCACTCAGCAACCATCATAAGAGATTCCCCACTAGGCCTTTCTCGAGCAGCAATGACAGCTGCCTCATATTTACGTGTTGCAAGCTCTATCTTTTCTTTCTCTTCCTTGGATCCTTCTAGGACAGGGGTCAATTGCTCTTCATCGTTTGGGCCTGAGACACATACCAGAAACGTAGTCTGCTGTTCCACCTCTTCTGATGCAATGGTGGAGACCATATCCACTCGGTATGGTGTGTCTGCATCATCCTGCTGTTCTGACTGGTTGGCATCGGCGAGCTCAGTAGCGTCGACAGCATCAAGCTGATAACGCAACGTCAAAACTTGACAACGTAGAGTATTCAATTCTGCTTCCATACTGTTTGCTTTATGGTTTGTCTTAACTATACCACGCTCTGCTTGCTCCAATAACAACCTCATTTCTCCAAGCCCTTGCTGCTGTTCACGCAGTTCAAGTTGAGCTGACTGAACATAGCGATCTTTCTCAGCCAGTTCCTGACGCAGCTCATCTATTTGGGCCTGTAACAACTTCATGTCCGCGGACTTCTCTTTGACTACATTAATGCCATTGCCATGAGATGCATTGNTTCCGANTTGCCTGTCGAA 5 1 5' arm Physcomitrella_patens mirnest 100 100 -37.6 .........((((...(((.((((((.((((..((((((((((((...((((((......(((((((.((...(((......))).)))))))))))))))...)))))))).))))..))))....)))))).)))....)))).... (-37.6)