mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCCTCA AGGATGATGAAGATGATGAGC CGTGAGGATGATGAAGATGATGAGCAAGAAGCCAGATTCCATTATCAAAGCTTGCGGCACCACCATCACCACCCTCATCATCATCATCATCCTCAG AACTAGTCTGAGTTTTTTTTTTTTTTTTTTGGCATAACGTTGGCGGTGATTACAATTGTCACAATAAGTTATAAGTTTCCAAGTCACGTGTGCAAAGGACGTGATTCTCCTGCTACATAAACTCTACGAACCTCCACCAACATTAACTGCATTGTTCTACAGTCCTTTCAACAGTGTTTCGGCGTCGGATACTTTGAAGTCTGACGGGACTTCCTCAACGTTCAATTGTTTGATTTTTCCGTCCTCAACGACTGCCGCGTACCTTTGAGAGCGAGGTCCGAGAAGAGCGCCTGGCCATCTGCAGGGCAACAAGAAGCAATTGAAAACGAAGGTAACATGGGAATGGATTCCGAGGGGACGAATTGCTCTCGTGAGGATGATGAAGATGATGAGCAAGAAGCCAGATTCCATTATCAAAGCTTGCGGCACCACCATCACCACCCTCATCATCATCATCATCCTCAGTC 1 0 3' arm Physcomitrella_patens mirnest mir-598 3e-35 100 -31.5 ..((((((((((((.(((((((((....((((..(((......)))...))))..((...........))...))))))))).)))))))))))). (-31.5)