mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATTTTTC GTTGATGATGGCAATGATT GTCGCACTCATACTCGTCTGATCATCATCATCATCATTTTTCTGACACCACATCGGGATCACCAGTAAGTGGATGTTCCGGAGTTGATGATGGCAATGATTTGAAGTACAAGCTCAGGG ATTGTTTCTAGACTTCTACGAGAGAGAGAGAGGAAGAGAAAGAGAGAGTGAGAGAGAGAGAGAGAACACAGCGGTTGTGCTTTGTGGCTTCTGAGGAGGAAAGTGAGAGCGAAGTCCTCAATCTGAAGTAAACAAGCGCCGGAATTTGAGCTGACCTGAGCCGAGCAAGACATACTTGTCTCTGATTAAGATTAAGGTGGTTCTGCTGTGATTTACAGACTAGAACTCTCAGTGACAATGATGATTTCGACAGACATATTTCATAGCTGCTCACTGAAACCAGAGTGTACCTAACTGCTTACTGAGATTCGGTTCAAGTTTTAACCAGCTGGGCGATTTGGTCTTGAGCTTTCAGAACACATATTGGGGGGAGTCTGCTTTCAGTTTGATCAATCATTTGAGATTTTCAATGCAAACATCTCAACAACACCGAAATACAGCTATCCATATGCTGCATCACCAGCCTATGAAGAAGATTGATCCATATTCTTCACCGCATTTTCAAATTTTAGAGAACAGTGTATGCCCAGATACTGGAAGCCAAGGGAAAAATGTCTCCTTTCAGACGGACAAGGAAGAATTCTTTACCCTGGAATCAACTCCTGTCAATGACGGTTTTATAGCCTGTGATTCCCCTTCAGCTATTAGTGGCCTGTCTAACCGGAGTCCTTTTTCACCACAAGGGTCGCACTCATACTCGTCTGATCATCATCATCATCATTTTTCTGACACCACATCGGGATCACCAGTAAGTGGATGTTCCGGAGTTGATGATGGCAATGATTTGAAGTACAAGCTCAGGGAACTTGAAGTTTCACTGCTAGGGCCGGAATCAGATATTGTTGACAGCCACTATTGTTGTTACAAGAGTGACATGCCAAGGTGGAGTGAGAAAGAAATTGCTGAAATGATACCCAAGCTGAACCTGAAGAACGTTCTCATTCACTGTGCACATGCAATATC 3 2 5' arm Fragaria_vesca mirnest 100 100 -30.5 ..........((((..((.((((((..(((((((((...((((((((((((((.((.....)).))..)))).)))..))))).)))))))))..)))))).))))))........... (-30.5)