mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGGAGAAGGCTTTGGCTAAC TGGACAGAGCTCGCTCCCTCA CTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCTAAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAG AGAGGAAGGAGGGGAGAGTGGTTGAGGAGGAGAGAATCAGAGAGGAACTGACACATGACCACAAAGTGGATGAAGGTGAGAAGCTTCCTGCTTATCAGCGCTACCACACACTAGCTCAGGACGTTCCCCCTGGCCTCACCCTGCCCTTCAAATACAAGGTTTTAGCAGAAATGTTCCGCAGTATGGACACCATCGTCGGCATGCTCTTCAACCGCTTGGAAACCGTCACCTTCGCCAAAGTCAAACAAGGAGTCCAGGACATGATGCACAAGCGTTTTGAAGAGTCTCACATAGGACAGATTAAGACGGTGTACCCATCCGCCTACACCTTAAGGCAGGAGAAAAACATCCCGACCTTCAGCGCTACAGTGAAGAAATCCACCTACCAGCTCACTGTGGAGCCGCTCATCGAAGAAGAAACAAACGGCGCCCGCCCCGTCCTGTCGGCTACTCGTCTGCTGGAGAGAAGACGCGCGTTTCATCAGAACCTGCTGGAAATCGTGAAGGGACACCATAAGGTGTTCCTAGCTTCGTTGAGCCCTCCTTTAGTGGTCCCTGATGATAAACTAACTCGCTGGCATCCCAAATTCAACGTGGACGAGGTGCCCAACATCCTGCCCAGCGACTTGCCTCAGCCTCCACAGACGGAGAAACTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCTAAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAGAGGCAGCTTGTTCAAAAGCGAGCGAGACACCAGTAAAACCAGCTGTGATGCCCATCCAGACCTCCAGTGCCCTCAAAGGAGTGTCCCAGTCTCTGCTGGAGAGGATCCGAGCTAAAGAGGCTCAGAAACTGCAAGCAGCAATGACGCGGAATCCCGAACAGGAAGCGCGTCTGGGGATGATGTCACGCCTGCCAGAGATGGCCAGGATTCTGAGAAATGTCTTCATAGCAGAGAAGAAGCCAGCCTTGATCATGGAGCTGGCCTGTAATCGCATGATCGCCAGCTATCGCTCTTCTCTCAGTGCAGGGGAAATGGAGAAACACATCCGTTTGCTGGTGGAGTTGGCTCCAGAGTGGCTCACGCTGCATCCCATCAGAAAGGATTTTTACCTCAAGCTGAACAAGAACACTAACATGAACCTGGTTTTGGAGAAACTGAATCAGAAGATGAAAGGAAGAGGAGCGACTCTGAGCGTGTGCGTATGTTGGGACTTGTTGAAATGACGTGCAATATTTTTAATCTTTGGACTGTGACTTTCTCCAGACACTGGTCTGTGACAGGAATGTT 4 0 3' arm Ictalurus_punctatus mirnest 100 100 -29.8 .......(((((.(((..(((((((.(((((((..((((.((.((.....)).)).))))..))))))).)))))))..))).......))))) (-29.8)