mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTTGTGTGTGCATTTTTAT AGAAATGACTTATGACAATC TAGAGGCAAGAAATGACTTATGACAATCTTTGTTGTGTGTGCATTTTTATAATAA AGAAATAAATGAGCAAATTAGAAAAGAGAAAGAGGAAGCTGAGGCTCGTATGCGACAAGCATCTAAGAATGCAGAGAAGTCAGCTGGCGGAGGTGGAAACGGAAGTAAACATTGGTCAGAAGATGATCTGCAATTACTCATTAAAGCTGTGAATCTCTTCCCTGCTGGAACAAATTCAAGATGGGAAGTTATTGCTAATTACATGAACATACATTCTTCTTCTGGAGTTAAGAGAACCGCCAAAGATGTTATCGGCAAAGCAAAGAGCCTTCAAAAACTTGACCCTCATCAAAAGGATGACATAAATAAAAAGGCTTTTGATAAATTTAAGAAAGAACATGGCGTGGTGCCTCAGGCAGACAATGCAACACCTTCAGAACGATTTGAAGGTCCATGCACAGATTTCACCCCTTGGACAACAGAAGAACAGAAGCTTTTGGAACAAGCTTTGAAAACATACCCAGTAAATACACCTGAAAGATGGGAAAAAACAGCAGAAGCAGTGCCTGGCAGGACAAAGAAGGACTGCATGAAACGATACAAGGAACTGGTTGAAATGGTAAAAGCAAAGAAAGCTGCTCAAGAGCAAGTGCTGAATGCAAGTAGAGGCAAGAAATGACTTATGACAATCTTTGTTGTGTGTGCATTTTTATAATAAAA 3 1 3' arm Ovis_aries mirnest 100 100 -10.6 ........(((((((((.((((((((...)))))))).)).)))))))....... (-10.6)