mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTCTGCATTTCTAACAAGCT CGTGTTAAAATGCAGATTCT AGTCCCCTGGGATCGTGTTAAAATGCAGATTCTGAATCAGTGGGTCTGGGGAGGGGGACTGAGAATTCTGCATTTCTAACAAGCTCCCAAGTGAG GATCCCTCTTATTGACCGAGGACGGCCGAGTTGCCTGGCAGCCCGTCCCCGCAGCGGGACATTTCACCTGTGGCTCTCTGCCGCGATAGTGGCCTCTTCCTTTTTTGGGTTCGTTTCTGGCCGCCCCTCCGCTCAAGCCAGGTCAGCCTCCCGTAACACCCCCTTCCACACCGTAACTTCACCTCAGCGCAGTGTGTTTAACACAGTCTAAAGGAAACAGGGATCTGGGTACTTACTTTTAACTGCCTGGGGGCTCCATGACTCAGGTCTGTCTGTGTTCCTGCTGTGTCCCAGGATCACCCAGCGCCCGGCCTGGTGCACGGCAGGCGCACAGTAGCAGGAATGAATGAGCGAATGAATGAATGGCTGCCAGGGCCAGTACCTGGGGTTTCTCCTGAGGGCAGTGGGAAGCCGCAGAAGTGTTTTAGGCAGAACTGGACCCATACTTCTCAAACTAATGTACATATAAGTCCCCTGGGATCGTGTTAAAATGCAGATTCTGAATCAGTGGGTCTGGGGAGGGGGACTGAGAATTCTGCATTTCTAACAAGCTCCCAAGTGAGGCCAGTGCTTTGAGTAACAAGGGTCTTGCTGTGCTGTTCTGCTCAGTAAGGCAGCCACCAGCCACGT 5 1 3' arm Ovis_aries mirnest mir-544 2.0E-18 bta-mir-544b-1 7.0E-5 -27.5 .......(((((...((((((((((((((.......(((((...(((.....)))..)))))....))))))))).)))))...)))))...... (-27.5)