mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTGCGGAAATGCTTCTGC GGAAACACTTCTGCACAAAC AGAGTACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTAGATTATGGATACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGCCTGC GGATTCTACTCCTAAGTCATCATGGGCTTTATCCAACTCCTGATGAAAAAGAAGGAACTTATTCCTTTGGTGTTTTTCATGACCGTGGCAGCGACTGGAGCTTCGGCATTTGCTATGTATTCCCTTCGAAAAACCGATGTGATCCTTGATCGAAAAAGAAATCCAGAACCTTGGGAAACTGTGGATCCTACTGTACCTACAAAGCTTGTGACAATCAACCAAGAATGGAAGCCCATTGAAGAGTTGCAGAAGGTCCGAAGGGCAACCAGGTGACCAGTCCTCGCCTTTTTCTTCCAAAGAGTACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTAGATTATGGATACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGCCTGCCTACGTTTTTGGACTCTGGATAAGGAATTATAAAGGTAGCACAGCATAACCACATAGTCCC 3 0 3' arm Ovis_aries mirnest mir-147 1e-25 cfa-mir-147 7e-39 -30 ......(((((.((((.((((((((.((.(((((((((..(((.....))).......))))))))).)).)))))))).)))).)))))..... (-30)