mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGACTTCCCTGGTGGTCCAGT TGGAAGAAGGGAAATCCAA TGGTGTTACTACTGGAAGAAGGGAAATCCAATATCAAGGTGCTTTCAAGATACTAGTTAATAGGACTTCCCTGGTGGTCCAGTGGTTAAGAA GCTTTAAATGAATTGCATTGCGGGGAACATTCACCTCCCTTCTTTCCTCTCCTGTCTGAAGCTCAGGAAACCCAGCTGGCACTAGGATCATATTTTACTCGTTTCTTCTTGCCTATCATTAACTTAGGAGCTAAAAACCATCCCAAGTCTACAGCCAGTGTCTAAAGGACGCCCGCCACAAGCCCAGCAGTGCCCCCAGGGCTTAGCATACATTTCTTGCAACTATCTCTGAGGCAAGTCCTATAATTATCATCTCTCCTTTAGGGATGGGAAAAAAAAAAACAAAAAACACACAACGGAGGCACACAGAGAGGAAGTAATTTGCCAAGGTCACACAGCAGTATGAAATAGAGCAAAGATTTGAACATAAAAGGTCTGACTCATCACTCATTGTGGTGGACCTTGGTGTTACTACTGGAAGAAGGGAAATCCAATATCAAGGTGCTTTCAAGATACTAGTTAATAGGACTTCCCTGGTGGTCCAGTGGTTAAGAATCCCGTGCAAGGGACACGGGTTTGATCCCTGATTGCCGCAGAGTAACTAAGCCTGTGGGCCACAATGACTGAGTCCCCTCCCTCTGAAGCCCGTGCTCTGCAGCAGAAGAAGCCGCGGCAGCGAGAAGCCCTCACACCACAGCTAGAGAGCAGCCCCCACTCCCCA 4 2 3' arm Ovis_aries mirnest tRNA 0.000005 100 -25.2 .......(((((((((...((((((.(((..(((.((((((.(.....).))))..)).)))))).)))))).....)))))))))...... (-25.2)