mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCAGTGCCCAGTGTGGACGT GTCCATGCACCTGCACCTGTACC CCCAGCCCCAGCTCCTGCCCCTGTCCATGCACCTGCACCTGTACCTACTGTTGCAGTGCCCAGTGTGGACGTAGGTGCCATCAAGCGTGCC TCCTGGACGCAGTGGACTTTACAGCATGGCGTCGGGCCAGCAATACCAGGTCACTCTACCGGGACCCGCGCCCTGGGGCTTCCGTCTCTCGGGCGGGAAGGATTTCTCCTCACCGCTGTCCATCTCCAGGGTAACTCCTGGAGGACGGGCTTCCATGGCCAACATCGCGCCTGGGGATGTCGTACTGAGGATCGGGTCCCGTGCGGCGGAAACACTGACACATATCGAGGCACAGAACATAATCAAGACCAACGATGGACAGCTAGAACTCACTCTTGTCAGAGGGGATGGCAGAGCGAGACCAATGCCAGCAACCCCAGCTGGACCTTCAGCACCCACAATATCAGCCCAGCCAGTGAGCGCTCCCGGAGGAGGCCCTGCTCCTGGAGCAGTATCAGTGCTCGCTCCGGCACCAGCTCCAGCTCCTGCCCCAGCCCCAGCTCCTGCCCCTGTCCATGCACCTGCACCTGTACCTACTGTTGCAGTGCCCAGTGTGGACGTAGGTGCCATCAAGCGTGCCGGCGAGGCCGGTCTGGGCAAACCTGCCGCGCCAATCGAAATCGAGGCCGGCGGCAGGAAGATCGTGCACGCTCAGTACGACACGCCCCTGGGTATGTACTCCACGGGCGCCGTTC 4 2 3' arm Branchiostoma_floridae mirnest 100 100 -22.1 ...(((....)))...(((..(((((((((....((((.((((........))))))))...)))))))))..)))((......))..... (-22.1)