mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTAGAAAGTTTGGAGGTGGAT CTGTACTCTTTATTTTCTGTCA ATTTTTCTGTACTCTTTATTTTCTGTCACAGTTGTTCTGTCGTGGAAATGTCTGTCGTAGAAAGTTTGGAGGTGGATTCGTACAGC ATTTTTCTGTACTCTTTATTTTCTGTCACAGTTGTTCTGTCGTGGAAATGTCTGTCGTAGAAAGTTTGGAGGTGGATTCGTACAGCGATCTTTTAATCGCCAATGCATTAATTTAAGCAAGTAAACAAAATGATAGAGTAATAAAACACCGACAATTATGACAAATACAAATGAAGTAACATTTCAAGAGCTTGAAGCAACTGATGTTGTAAGCATAGACCTTGTACCCGAACGGAAGGGAATTATACTAAAACACTGCGAGTATTATGTCAGCTCAAGGCGTCATGGCACAACTGTGACCAGAAGATACAATGATTTTGTACAGCTTTACGCATGTGCTATTTGCTAAATATCCTTANCGGG 4 1 3' arm Bombyx_mori mirnest 100 bmo-mir-2789 6e-42 -20.3 .....((((..((((..(((((((((.((((...((((.....))))....)))).)))))))))..)))).)))).......... (-20.3)