mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCACCATTCGAAATCAGTAC ACTGGCTTCCAAAGGTGAGTAGA ATTGGTTAATCTTCCTAAGTACTGGCTTCCAAAGGTGAGTAGATGGCATTCGATACACTCTAGCACCATTCGAAATCAGTACTGAAAGAGAAGATTTGT CAAGGAAGTTTCTATCACAAAAATATTTATTACTTTTTCATCGAGAACTTTACATTTACGTAACGATACTTTCAACCCAATGGATGATACAACTCACTAGTTGCTTTTGTGTGTGAAGTTGTTATTGTTTTGTCATACTTTTTTTTGTTTAATTTTTAAAGGATTTTCTTGTATTAAAACTTATTACTAAGATTAACCGATCGTAATCATATAAAAAAAGCAAAAATAAGAAAAATTAAAATATCTGAGACATTATAAAATCGCGTCCCCTTTTTTCGATTGTAAAAGAGATACTAATTCGATCGGTTTTCGATTACCTATTACAAAGGGTGAACATGTATAAAAAAGACAGAAAAAAGGATTGCTAAGATCAACGGTTTCACGTGGAGTCGACTCTTTTGATTGTTTGATTGCAAGTGTGAGATAAGTCGCGCGAAAATATCATCGAATCTAAGGAAGCTGGTGGATTTTTGTTTTCTGAAGAGATAGGGTAAACTCGCAGAGAGATGAGATCAAACTGTGGGCATCGATTGAACAAGAGGTGCAATTGGTTAATCTTCCTAAGTACTGGCTTCCAAAGGTGAGTAGATGGCATTCGATACACTCTAGCACCATTCGAAATCAGTACTGAAAGAGAAGATTTGTTCTGCGTGAGTTTGCCGGTCAATTCTAGGAACGTGTCGCAGTGCAGCTGCGAATCGGATGTGGTTGGTGAAAGATTATCGCGTTATTTTTTTTTTTAGTGAATC 4 1 3' arm Aedes_aegypti mirnest 100 aae-mir-285 3e-44 -27.3 .......(((((((((.((((((((.(((.((.((((..((((((..........)).)))).)))).)).))).))))))))...)).)))))))... (-27.3)