mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCCTCCC GAGGAGGAGGAGGAGGAGGTA CGCTGGCCATCGGAGGAGGAGGAGGAGGAGGTAAAAGTAATCTGTCGAAGCAGTTAGAATAACATGTCTACCATCGTGTGCGGCAAGAGATCCGCCATATTCGAAGACCTTCCTTCTGCTTCTGCCTCTTCCTCTTCCTCCTCCCCTCCCGTCT CCCCTTTACCGTCGGGGGTATTTGATTAGTGAATGGGAAGTGGATAGAGGGGTAATCGGAAGGGACAGCTGACAGCTGTGTGATTCACCTGATTGGTGATTGCTCCTTCTTCATCGTCTTCATCTTCATCTCCATTTTCTTAGGGTTTGTTTCTCTCTTATCCAATTGTGGTTCTGGAATCTGCATGAACAGATCGGCGACGTTTGTAACCGCTGGCCATCGGAGGAGGAGGAGGAGGAGGTAAAAGTAATCTGTCGAAGCAGTTAGAATAACATGTCTACCATCGTGTGCGGCAAGAGATCCGCCATATTCGAAGACCTTCCTTCTGCTTCTGCCTCTTCCTCTTCCTCCTCCCCTCCCGTCTCCAAGAGGATCCGCTGCTCCTCCTCTTCCCCCGTTCGCAGGCACTCCTTCCTCCTCGATCATCTCATCTCTTTCTTCCCTGACATGGAC 1 0 3' arm Arachis_duranensis mirnest 100 100 -56.4 ...(((.....((((((((((((((((((((((.............(((((((...(((......((((....(((.(((.(((.........))).))).))))))).)))...)))))))))))))))))))))))))))))....)))... (-56.4)