mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAGTAAATGTTTATTGGATG TTCAGTTACAATTCACTTTAA TTTTAAAAATTAAAGTAAATGTTTATTGGATGAACTCGGTGGGGACAAACAGCCATTGCTTCAAACGTTCAGTTACAATTCACTTTAACCAGTCCA ATTGGGTTGGAGTTTGCACACCAAATTAAAAAGTCCACGTAGAAATACATTTTTAAAAATTAAAGTAAATGTTTATTGGATGAACTCGGTGGGGACAAACAGCCATTGCTTCAAACGTTCAGTTACAATTCACTTTAACCAGTCCACATTTTGTCATCGCCACGTTCAGCAGGAGAGACAACGTTCTTACGTTCATATAGAAATGTATGATATAGAACCAATATACTTCTCTGGTATGTAGAGTAAGTAATCACATCAGCTAATTGAATATCTATCCGCAACGTTCCACAACGCTGAGGTATCAGCTACTTAACCTAACGATCCGGAACACACCCCTTTACGAAAGTAGCACAGGCTGCCTACGAGGCAACGAACTGTTAAACGCTGCGTTGGTTTCCAAACGTGCCTGCAGCAGCCGAGACACAACATCTGACCTATGTCGTCGCCAGAGATCGCTTCCCTGTGCTGGGGACACATGAAGGTGAAGGGCTGCTCCTCTTCCTATAAGGACTGTAAGGTGTGGCCCGGGGGTAGCCGCGCATGGGACTGGAGAGAGACTGGGACGGATCATCACCCTGGAGTGCAGCCTGCAGATCTGGAGGAGGTGCTTCAGAAGGGTGTGGCGACTCTGGTCATCGGGCGGGGCATGAATGAGGCGCTGCAGGTCCCGTCCTCAACTGTGGACTTCGTGAGACAGAGAGGAGTGGAGCTGATAGTTCTGCAGACAGAGAAGGCCATCACAGAATACAACAACCTGGTTGGCCAGGGAGCCAAGGTGGGTGGCATCTTCCACTCTACCTGCTGATGACATCATACTACAGGTGGCCAGTAGGAGAACTCTGAAAGCCTGGTGCGATTCAACATGTCATATTCATTACAGCACATCATAGCAAAATGTTTTGCAATGGACAAGTCCATGTAGTCCCTCCCTGTTTGGTGCCTGATGAACACAAACCTGGGGTGCATTAGCGAAGTGAAACATTCAGAACACCGTAATGAAGAGCTAAAATGACTTGCTGTGAATAAAGGCTTGTTTTTGTC 2 2 5' arm Oncorhynchus_mykiss mirnest 100 cfa-mir-545 0.00007 -15.8 .........(((((((((.(((..((((((((.......(((((.(((.......))))))))..)))))))).))).)).)))))))........ (-15.8)