mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGACATCATCATACTGAGGA CTGGTGCTGTGAAATCAACT AGGTCATTCTTCCTGGTGCTGTGAAATCAACTCTTCCCTTCATAGACTGATCAAAAACAGGTTGACATCATCATACTGAGGATAACTGACA NCCTGCAACTTCTCTCAAGCNTACAGCCCACTCCCTTTTCNTGGGGTTCCAGACCGACTGACCGAGAGGTTCAGCTACCTGGTCTGTCAAGAACAGACTGGGCAGGTGGAGAGGGGCTGGACTGGGCCAGGCTCACAGCACCAGTGCTGCGCAGGCCGAGACATGTTCACTGTCAGGTCTGCTGCTCTAGTGGAGAGATTAAACGGGTTGTGGTGACAGCCCATCGACATGGCAGAGACGTATATCGCTGTGCCCGGAGTAGTGATTGGGGAGATCAACTGCCAATCATTCAGCCAGAGGATGACTCAAGTAATTTAGACTGACCAGTCAGTGCCATTATGAATGAACGAGATGGAGGGTGTTTCTAAGGTCATTCTTCCTGGTGCTGTGAAATCAACTCTTCCCTTCATAGACTGATCAAAAACAGGTTGACATCATCATACTGAGGATAACTGACATGACATGAAACACCAACATTTGATTCAAGCGCAACTCTCCTTCTAAAAGGGTATGTGGTGAAGATTGTTAATGTGAACATTGTTCAGTATATAACTGTCAAGGACACGGCAATAAGTGTATGATTTGTTAAATCCTGTGTTTAAGTGAATAAGTGCCAAACACATTCATCATACTTTGGTCAGAACCCCACCCTCCGCTCACCACGGTCCATAAATTGCATGTTGTTTCCTGTAATGGGGAATAACATATTTACATTGTAAATAAGAGTTAATAAACAGTGAAGTTCAAGTGCTC 4 1 3' arm Oncorhynchus_mykiss mirnest 100 100 -18.4 ..((((....((((((((..((((..((((((.......(((.....))).........))))))..))))..)))).))))....)))). (-18.4)