mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATACATACACACACACACAA GTGTGTGTGTGTGTGTGTGTG CTCCAGACCTTTATACATACACACACACACAACCCTCAGCTAAAAGTGTTCCTTGTTGCTCTGCAGAAATCTGTGACCTCTTCGTTCCAACTGGTTTGAGCATCCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTT GCGGAGATGGGGGAACGGGGCATCTTCTTCTCAAAGAAATGCCCACCGTCCAGTTAGACACGCATCATATGGGCACCGATGTAGTCATAGTGAAGAGTGGCCGGAGAATATGTGGCACCGGTTGTTGCCTTGCCAACGCTCCCCTGCACCAAAACAAGAGTTATTTTGAGCTCAAGATCCAGTCAACAGGTATATGGGGGATAGGTGTGGCCACTCAGAAGGTGAACCTGAACCAGGTCCCCATGGGGCAGGACATCAACAGCCTTGTCTTGAGGCATGATGGCTCGGTGTACCACAACAACGAGGAGAAGAACCGCCTGCCTGCCAACAGTCTTCCACAGGAGGGGGACATCATGGGCATCACATATGACCACGTGGAGATGAATCTCTATCTGAATGGGAAGAATATGCACTGTCCAGCTTCAGGGATCAGAGGCACCGTGTTCCCGGTGGTTTATGTGGATGACAGCGCCATCTTAGACTGCCAGTTCAGTGACTTCTACCATACGGCACCGCAAGGCTTCGAGAAGATTCTGTTTGAGCAGCAGATCTTCTGAACAGCACCTCCGTATACCTCCAGACCTTTATACATACACACACACACAACCCTCAGCTAAAAGTGTTCCTTGTTGCTCTGCAGAAATCTGTGACCTCTTCGTTCCAACTGGTTTGAGCATCCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTT 0 0 5' arm Oncorhynchus_mykiss mirnest 100 100 -39.1 ...((.((...(((((((((((((((((((((......(((...((....((..((((...((.(((...........))).))...)))).)).)).)))......))))))))))))))))))))).)).)).. (-39.1)