mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATATGAGTTTATATTTATTTT AATATTAATGAATGCGTATGC AGCGGAGTTAGAAATATTAATGAATGCGTATGCAGAATATGAGTTTATATTTATTTTAAAAAGCAA AGGTTTAACAAACTCTGAGTTGTAAACCTGAACTCTGGGTTGACTAACTCTGAGCTGTCAAACTCAAGCGTTTTCATTTTCAGAACAGGTGATAACTCAGAGTTGATTGAACTAATTGTTAAGTTAACCCTGAGTGAAGCATGTGCATGAGGAGATAAAAAGCCCTCATGAATGGAACACCGATAACATGATTCATCATAGCAACAGGAGAAAAAAGGGCTTGAACCTCCTACTTCTCCCCAGCGGAGTTAGAAATATTAATGAATGCGTATGCAGAATATGAGTTTATATTTATTTTAAAAAGCAATACAGTAGCAGCAGCAAAAGAGCGTGAGCTGGCGTGGCAGAAAATTGCTGACCGAGTCAATGCGTGCAACCCAACAGGCACAAAACGTACTTGGCAGCAACTGAAGATGAAATGTAAAAATATACTTCCAACTGCAATGCTGGAATTTACAATGAGGAAGAGGGGGGGTCCATCCACTTCCACAGCACAACTTACCTCCTCCGTAAGATGTTGTTCAGCATTGGCCCATTACTTAGAATGAAACTAAGTAGACCTGGCACTGTGAAATTCAATGTCATTTTGTATTCCTGTGAAACAGCTGTACAGGGTGTACTTAGAGAAAAAATTGACAAATGTCATCTAGAAATTGTCCCACAGGCTGCAGATGCAAAAGATACAAATAGAAATACCACTGCTAGAACATCAGTTTAAGGTGGATGGTGGNATGATTTTNNACTGTTNGNNACACNTANNAACATACAAACTACTGTACT 4 0 3' arm Oncorhynchus_mykiss mirnest 100 100 -11.7 .((....((.((((((...((((((.(((((.....))))).))))))...)))))).))..)).. (-11.7)