mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCTGGTTGAAGGGGACCAA GGTTCCGTTTGACCAGCCACG TCACGGCGCAGTAGCTGGTTGAAGGGGACCAAACCTCACAGAAACACCTGACTTGGTTCCGTTTGACCAGCCACGGCAAGGCG NNGGGATACTTATTCTTCATTTGCCATACAGGAAACAAAACATCAAATAACCGAAGAACACCATCTACCATTGTCAGTAGACCACCACCTCTAAAGTATGCAGCATGCACCACAGCGCCACTGTGTCTTTGATTCCACGCTGACTGAATTCACGGCGCAGTAGCTGGTTGAAGGGGACCAAACCTCACAGAAACACCTGACTTGGTTCCGTTTGACCAGCCACGGCAAGGCGTGTTGTGGAGAGTAAAGGACGTAGGAAAAAAAAAAAAAAGAAGGAAAGGAGGGGAGGAGAAGGAGACGAAAATAAAAAAAAAGTGGAGGCCGTCTGTGAGAGCCATCGGGCCCGTGGGGCCGTGTCCTCCTCTTCGGGGCTTACCTTAACTGATTTCGGCTGTGTTTTCTGTGCTGAGCATCTTGAGGCCACATCGGGGTTCAACGAGCTTATCCTACACTGCACTAACCACCAACCAGCTCCAAACCAAATGGCCTTTGGAAAGACTGGCTCTTCTTTGATTAGACTGCGATGAGAATTTCCTACTTCTTACGCCTCGGCTTCCCCTCACCTGGCAGAGGCGTCAGGCCGTAAAACTCACAGCAAACATCTGGCAACTGGTTTTGCCGCCTGATTTTACTCACACGTTGCTGCAAATCAAGGAAACTAGAGGAAAGAAGGTCCGCGGCGTGTGAATCGAGAAGGACTTTTGAGCGAAACGCAACCCGTAATGCCCATTTGTTGTCAAACATCAACCTTTTACCTTTGAAATACAGAAGAAAGCGTACCTACAGAAAGTCCTTGGTCAAAAGGTAAAAGTTTGTTAATCACACAGAGATGACCAACTTCTCAGACCAACCTTATTCTGCTGCCTTCTACAACCTTCAAAGCTCATCTCAGACTCTCCCTGTGCTCCCTGAGAAACGCCCCCCCACCCACACACACACACACACACACACACACACACACTTCCTCCTGCCCCTCTGCTGTCTTCGCCCCGGCTATCCTGCCATCGAACGCCCTGCTTCGC 2 0 5' arm Gasterosteus_aculeatus mirnest mir-133 1e-40 dre-mir-133b 8e-32 -29.4 .......((.((.((((((((((.((((((((...(((..........))).)))))))).)))))))))).)).))...... (-29.4)