mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAGGATGGGGGTGAGGGGTGC CCTTTTTTCCTCTCTTTCT TCTTCTTGGAGGAGGATGGGGGTGAGGGGTGCTGCATTTTGGTCCTTTTTTCCTCTCTTTCTCCCACTTT AAGATATGTAAGTTAGTCCCATCACACAACTTCATCAACCGACCCTTCTGCAAAAGCTGCATCATGGAGTAAGCAAATTGAAGGCAACAATCAATAAAATTCAAGAAACAATGAAAATATTCAAGACGGAACAAACAAAATGTATTTGAAATGATATATTAAAAGTGCTTTTGATTTTCATGTCTCTCCTTTGACTGATGATCGACTCCACACGCATTCATGGTCCGGGGAATGGCGCCCCAGACGTCCTCACAGTTAAAATGTCCTGGAGGTCAGTTTGCTGCTGTTGCAGGTCCATCGTATCAATTGGGGAAAAAGTTCAACCATCAGTGGTGATATTGTCATAGCGATTAGACTGTTTCTCATTCGTCTAAATTTCTTTATTTTTCTGTTTTTAAATTCTCACTTCAATTTTAATTCTTGGAGAACATAGCTTCGACAACATATATCGCACTCATTATAAGAAGCAAAAGGTTATATCAAAAAATTATTAGTATAGAATCACAGAAACCCTGGTTTAGAACCAGAAAAAATACAAAACAGAGAGGTACATAGACACAGGACAATTCTTATAATTGCTTGGAAACATTATTTTCCCGCTAAGTCTTTTTTTCTTACTGCGCATATGATGTTTTTCATTTTATTTGTATTTTTTACAAAAAAAAAGGAAAATAAAGACTAGTATTTTACAAAATGAAGAGTATTGTTCTTGACGATGAAGGTGGATTTATACAGGTGTAAAGTCCAGTTCCAATATTTTTCTGTACATAATGTATTCCATCTCAGTCCCAGAAGACAGAAAAAAAGTAATGTCTTCCAATTTTCTCATAAAAGGTCCTATATATAGTCTTCTTGGAGGAGGATGGGGGTGAGGGGTGCTGCATTTTGGTCCTTTTTTCCTCTCTTTCTCCCACTTTCATATTAGGATCATTGGATGGACATGTAANGCCAGTTGAAGCTGCTCCCGNNATATAGCATATCCCCTGATGAGGNTTTCATAGGAGTTTTACCTACCNAGCGNACGAAGAACAGCTGCTCGATTACCGATGAATGAAACGTGCGCAAAGAGGGCAGCCGCAGNCAGAGCTTTCCAAGNCGCTGGGCTGGTTTGGGTACTGGCTCCTCACTACTCCTCCCGGGCCACTGAAAATCCCCCTGCANCTCTCCATTGAGCACGTTCCAAGGGCCAAAACTCTGAAGTAAAACACCAAGGCTTAAGAACCTTTCCCTTCGAACCACTGGAGGGCTAAATTTTCCCTTGTTCTCGGGAACCCGGGGTTTCTTAAACCCAACCCGGCGCCGGAAAATTGAGGGGGGAGGCCCCCCC 1 2 5' arm Gasterosteus_aculeatus mirnest 100 bta-mir-2392 0.0008 -24.3 .......(((((((((.(((((.((((((.((((.....)))))))))).))))))))))))))...... (-24.3)