mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTTTGTTTGGTTGTGTGTGTG TAACTGCAACCCTTTAGATAA GGGACATGTTTGTTTGTTTGGTTGTGTGTGTGGTTCTGAACTGTTACATATATTTAGCTCCATCTTCCATAACTGCAACCCTTTAGATAACCAACCGA CAGTCTTTGTGCGTTACAGCAGTGAGATAAAGAATGTTTCCACAGTATGTGTCTGACACTAGAAAATAAAACTGGCAAGATTTTGGACTGTACAGGTATTAAATCATACGGTGAAGCCTCAATACAGCTGTTATTTCATCCAAAACAACTCACCAATATATATATTATATATATATATATAAATATATTATATATATATATATATATAAATATATTATATATATATATATATATATAAATATATTATATATATATATTTTATATATATATATATATAAATATATAATAATATATATATATATGACACACACACACACACAGTGAGGAATATACACACTCTAGCTTCAACCCACGGACAACACACTAAACCTCTCAATTGTGTGTTTGTATGTGTGGTGACTGAATAGGGACATGTTTGTTTGTTTGGTTGTGTGTGTGGTTCTGAACTGTTACATATATTTAGCTCCATCTTCCATAACTGCAACCCTTTAGATAACCAACCGATAGCTCCACTTCGCATCGTCTGTCACAATCCCTCAAAACCGTAGATTAAAATGAGTACAAACACACACACATTTTGGGATGAGTACGTTCGCTGATCGAAAACTCTTTGTAAAACAGTACTGATGTTTAAATGGCCGGTCTATATTCTAGGATCAATCATACCTAATTCTGGTGTCTTCAAACAGGCCTCAATAAATAGCAAATGAGTAGAAGGGGAGTGAAAGACAGACNGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACNCNGGTAAGCGGCGTGAGTTCTGCCTCTTCACCTTCAGGGTAACTGGAAGTGACCTATTAGCAGGCGGGCCAATCACGGGGAAGGATCCGGGATCCGGTGCCGGACCGATCGCACCACTTCCCCGAGGGGCCCTCCGCCTGTTGCTTGCGGTTGAACANCACTTAATTCCAATCACAACAGCATGGTGACTGGTTTCTTCCAGAAATTGCGAAATTCGGGGAGCCATTGGGGGCCCAACCGGGCCGTCCACCCACG 5 0 5' arm Gasterosteus_aculeatus mirnest 100 100 -19.4 ((....((.(((((((...(((((((..(((((....((...((((........))))....))..)))))..)))))))...))))))).)).)).. (-19.4)