mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAATGCATAAAACCAAGAAAT TTCTATTTGATGCATCTGA TCTTCACCACTTTTCTATTTGATGCATCTGACTTCAAATGCATAAAACCAAGAAATGCCATAAAT CATGGACATTCCACAGTACGCATGGCTCGGGCAATTAATACAGCTTTGTTTGCCAGTTCCTGTAATGTGTTTTTTTTATTATCATTTGCTTTTCAAATGCCACCATTTTCTGAGTATTTTTCAGCATATGAGCATATCCAATTGAGATTTTTTTTTTCAAATCTTTCTTTCTTCCCCCCCCCCCAAATAGGACAAAGTGTAGTCACAGCTCGGGTGTTTATAAGATTCTGCTAAATCATGTGAAAGATGACTGCTTACTTTTCTATGATGACGGGAACACTTGAGATGATGAAACTCACCATGGTTTAAAAAGATGACACTACAGGGGAGCTAAGGGTGGAAGGATGTGACAAATTGTCACTTTCTTGAGTTTAGAGGGACTGCACTTGTACAAACCCAAGCTGTGTTAAACTACAAAACTGTGGAATAAATTGCCTTTTACTCCAGTCAGCCTAGCTCTGGGCTATCACAGCGTTCAGTGCTGCTAACTAACGTCCAACTGACAAAGTAACCTTTTTAAAGTAGTGACACTCGCTGGGAGATGGGATTGGTTGGGACAAAGACGCTCATGGTTGTCTAGTTGAAGCTTCACTACAGAACCTGTGTATCCTGTGCCATAATGAGATCTGTTGTAAGAAGGATTTTTACCCACTAGTCATTTCATTGGCACTTTTTTTTTTCTTTTGCTTCAGCTCCACTGTTCTGGCCTTGTGGGATGAGTACTCATTAAAAAAAAAGTTTCATGTTAATTTCTTTTTTTTTTTTTTCTTCACCACTTTTCTATTTGATGCATCTGACTTCAAATGCATAAAACCAAGAAATGCCATAAATTGATTTATCACCTTGTTTAATGACAGATCAAATAAATTTATTCCACCNNNGAAAAAANNNNNNNAAAAAAAAAAAAAAAA 4 2 3' arm Gasterosteus_aculeatus mirnest 100 100 -10.3 ...........(((((.(((.((((((.((....)).)))))).)))...))))).......... (-10.3)