mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAATATCATCTTATACTGTAA ACAGTATAGATGATGTACTA TTATGTCATGTAGCCCCGACAGAATATCATCTTATACTGTAAGTTTATCAACAGACACTACAGTATAGATGATGTACTAATCAGGGTCTCATTCTCC GGGTATTTCCTTTCCTCGTCAGGCCTGACTCAGCTTCCTGTTGGGAGCTTTAAAGTCACGCGCGTTGACCAAGAAAGGGAAACGCCCTCCAAAGATTTGGGCAAAGGGATTCCTACCTGAATGATATTCGGGGAAATATAACGAACATTGAAAGCATTTTTTTTATGGCTGCTGCAAGTCAAACTGATTACTACAACAACAAAAATGGCACAAAATTACATTAATTCATTGAAAATGGTAAATGATGAAAAAAAATGTTTTCCTAAAATATTAACAAATGGATGAAAAGTGTTTGCTCAAAAAAGGTTGTTTTTTTTTATAAGTTCATTCTTGCTTTTGCCCAGATGTACTTTCTAACATGATACATGCATCACGAGATACACACGGGACAACAATGTGTACTTCTTGCCGTGTGTAATCAGGGTGTGGGTAATCATCGGGCCACAGGCAAACAGGTCAGGACTAGATAAGAAAAAGTTCACCCCCTGCTGTGTGGTCCACCCCAGATGCCATCACAGTATGCTAATGAGCCCGGCGGCCTTTAAGTGTCGGCGGCCAGCGGCCACAAGGGTGAGAAGCTCCAGACGTGGACACGCAGAGGCCACATAACCGGCCCGACGGCATAAGGTGAGAACACACACAGAATGAGAGGGCGCTTCGTGGCGCCGCAGCAGCTTCCAGCGCTCCCATTTTCTTTTCTTTTATAGTGCTGTAAAATATTATTTCTCTGGCTGGCATTTGAAGGCGTTCCTTTTTTTTTCACATCAAAATACCATCTTTTCCACATGATTAACATTTTCACTGGTTGACCTTCTCTGCCGAGCATCACTTATGAGACGTCTACCTCCGCCTTGCAGATCACAAACACAGGAAATTGCTGCTAACTGTTATGTCATGTAGCCCCGACAGAATATCATCTTATACTGTAAGTTTATCAACAGACACTACAGTATAGATGATGTACTAATCAGGGTCTCATTCTCCCCGCCGACCCCATCAGCGCACGCTAACCGACTGCTCAAAGGAAAAGACGTCGAACCGTTACATTACTGAATTTCACNTATGGGAAGGTTATACGGGCCTCGGTCATGACATCTGCCCGGGAGAAAAGAAAAGTTTGGGATGCACGGTTTGAAGTAACCCCGGAAGGCATCTGCAGGCAAAAACTTTGGGGTCCCCAAACAAACAAAATTT 2 1 5' arm Gasterosteus_aculeatus mirnest mir-144 2e-17 fru-mir-144 0.000000000000001 -25.2 .......(((..((((.((.((.(((((((((.((((((((.((((......))))..))))))))))))))))).))..)).))))..)))..... (-25.2)