mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACAGTATAGATGATGTACTA GAATATCATCTTATACTGTAAG GTTATGTCATGTAGCCCCGACAGAATATCATCTTATACTGTAAGTTTATCAACAGACACTACAGTATAGATGATGTACTAATCAGGGTCTCATTCTCCC GGGTATTTCCTTTCCTCGTCAGGCCTGACTCAGCTTCCTGTTGGGAGCTTTAAAGTCACGCGCGTTGACCAAGAAAGGGAAACGCCCTCCAAAGATTTGGGCAAAGGGATTCCTACCTGAATGATATTCGGGGAAATATAACGAACATTGAAAGCATTTTTTTTATGGCTGCTGCAAGTCAAACTGATTACTACAACAACAAAAATGGCACAAAATTACATTAATTCATTGAAAATGGTAAATGATGAAAAAAAATGTTTTCCTAAAATATTAACAAATGGATGAAAAGTGTTTGCTCAAAAAAGGTTGTTTTTTTTTATAAGTTCATTCTTGCTTTTGCCCAGATGTACTTTCTAACATGATACATGCATCACGAGATACACACGGGACAACAATGTGTACTTCTTGCCGTGTGTAATCAGGGTGTGGGTAATCATCGGGCCACAGGCAAACAGGTCAGGACTAGATAAGAAAAAGTTCACCCCCTGCTGTGTGGTCCACCCCAGATGCCATCACAGTATGCTAATGAGCCCGGCGGCCTTTAAGTGTCGGCGGCCAGCGGCCACAAGGGTGAGAAGCTCCAGACGTGGACACGCAGAGGCCACATAACCGGCCCGACGGCATAAGGTGAGAACACACACAGAATGAGAGGGCGCTTCGTGGCGCCGCAGCAGCTTCCAGCGCTCCCATTTTCTTTTCTTTTATAGTGCTGTAAAATATTATTTCTCTGGCTGGCATTTGAAGGCGTTCCTTTTTTTTTCACATCAAAATACCATCTTTTCCACATGATTAACATTTTCACTGGTTGACCTTCTCTGCCGAGCATCACTTATGAGACGTCTACCTCCGCCTTGCAGATCACAAACACAGGAAATTGCTGCTAACTGTTATGTCATGTAGCCCCGACAGAATATCATCTTATACTGTAAGTTTATCAACAGACACTACAGTATAGATGATGTACTAATCAGGGTCTCATTCTCCCCGCCGACCCCATCAGCGCACGCTAACCGACTGCTCAAAGGAAAAGACGTCGAACCGTTACATTACTGAATTTCACNTATGGGAAGGTTATACGGGCCTCGGTCATGACATCTGCCCGGGAGAAAAGAAAAGTTTGGGATGCACGGTTTGAAGTAACCCCGGAAGGCATCTGCAGGCAAAAACTTTGGGGTCCCCAAACAAACAAAATTT 2 1 3' arm Gasterosteus_aculeatus mirnest mir-144 2e-17 fru-mir-144 0.000000000000001 -25.2 ........(((..((((.((.((.(((((((((.((((((((.((((......))))..))))))))))))))))).))..)).))))..)))...... (-25.2)