mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGTAGTCCGCACATTGGTTA CCCAGTGTTCAGACTACCTGTT TTTTGCCTCCCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCATGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGGGCAGGGACACA CTAAAGGAACATTTCTCAGTGTTTCTCGTAAGGCGATGGTAAGAGGGCGAAAACCGCCAACTGTTTGCTGTTCAGATTGTGAGAAAAGAGCCATGATGGCAGAACGGTCCGGATTTCTCTTGAAGAAACGGCAGAGGCCTGGAATATACATTTGCCACGCAGCAAGTGGACTGTCGTGTGCGGTCCTCGGGGCAGTGACCTGCGGTCCAGCCGCCCTTTTGCCTCCCCCCCGCCTGCCCAGTGTTCAGACTACCTGTTCATCATGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGGGCAGGGACACACACACCCGCGCCTCGAGCAACAAGGACTCTACCATTCGCCGCTGGACGGGGGGAGGGATTTTACGAATTCACAAACTCTCTTGGGGACTAAAGTAAGATGTGTACCTCAATGCGTTTAGCAGATGCTTGTAACCCAAAAGCAACTTACAGTATACATTGAGAAATATATGCGCTGCCTAGGAATGACGTTACCATTAACATGGTCTACCAGTCGAGCCATGAGAACTCGTTTCAAACACACATGGGGTTCTGAGTCCAACTTAAGTGGCCTTAAATCGAGAGGGGGAGGGACTGTGAACGAGAAATGAAGAACAGATGAATCTCACCTCCTCGTCCTTGTACCAGGACACCGATTCGGCAGACAGGACGAACCAGTACTCCTTGGAGCCGCCCTTCATGATGCTGATGTTGAGGGTTAGCCAGCCTTTACGGATCACCTGTGGGACAGGAGGGCGGGATGGGGGAA 4 1 3' arm Pimephales_promelas mirnest mir-199 3e-38 dre-mir-199-3 2e-39 -37.2 .......(((((((.(((((.(((((((...((((((.((((((....((....))))))))))))))...))))))).))))).)))..)))).... (-37.2)