mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATGCTGCTGCTGCTGCTGCG CAGGAGGAGGCAAAGCGTCTA CGCGCCCGGGTGATGCTGCTGCTGCTGCTGCGGGTCGCCACGACACCGTCAAGGGCGGAGGAGCAGGAGGAGGCAAAGCGTCTACTGTAGTG TCCACTTCCACTGATGCGCGCCCGGGTGATGCTGCTGCTGCTGCTGCGGGTCGCCACGACACCGTCAAGGGCGGAGGAGCAGGAGGAGGCAAAGCGTCTACTGTAGTGGCCACCGTGACGGTAGAGCCCTGTAATGCTGCCGAAGGCGACGGCAATCCCTCAGCACCGCTTTCCAGCATGAAATGCAACAAGAACGGGGAGTGCAGGCGGGACTCCGGCACCGGGAGCCTCCGGTCCATCATGTCCAAGACGGACGGGTTTAAGCGGACCGCGTGCAATTCAACGACCAGCGTGGACGGAACCAGCACGCAGGGGCAGGACGCCTCGAACAACCCCGGCTTCCCGGAGAAGAAGGATTCCAAAGTGTCCTTTTCCAACGCTCCCAGCAGGAAAGCCTCGTCCTCGATCCACGGCGCACAGCAGCCCCGGAACTCGGTGACGTTCCTCAAATCCGAGGATGCCGGTCAGGAGGACACCGAGACCCGGGACAGCCGGGACAGCCAGACGAGCTTCATGCACAGGCAGTTCAGTAGCATGTTGCAGCCCGGGGTCAATAAATTCTCCCTGCGCATGTACGGGAGCCAGAAGGCGGTCGAGAAGGAGCAGGAGCGCGTGAAATCGGCGGGAAACTGGATCATTCACCCCTACAGCGACTTCAGGTTCTACTGGGATTTCACCATGCTTCTCTTCATGGTGGGCAACCTGATCATTATCCCTGTGGGCATCACCTTCTTCAAAGAAGACACCACCACTCCGTGGATCATCTTCAACGTGATCTCCGACACCTTCTTCCTCATGGACCTGGTGCTCAACTTCCGCACGGGCATCATTATCGAGGGACACTCCGACATCATCCTGGACCCCAAGACATCA 4 2 5' arm Pimephales_promelas mirnest 100 100 -34.1 .((...(((..((((((..((((.((.((((...(((((..(((...)))...)))))....))))..)).)))).))))))..)))..)). (-34.1)