mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGGGCGGGGCGGGCGGGAGG TCTCTCGCTCTGTCCGTCT TCAAGACGTCCCTCTCTCGCTCTGTCCGTCTGTCTGACACTTCACACACTAACCGGCACGACGGAAGGTGTGAAAGGACAAACACGCTGACACGATAGTTGTGGGCGGACACGCTAGCTACTGCACCAGCTTCGTCGTAGAGCGGGCGGGCGGGCGGGGCGGGCGGGAGGGGAGGGCCT TTTTTTTGGGGGGATAAGGCAATCTAGAGATGGGGGAACGTGATTTTACTCACGTACGAGTGACCGAAATTATTTCGGTGCCGGGCCGGGAATTTCCAAATAGAACTTTTTCACTCTAGTTCGAGAGGTCTAAACTGCACTGTAAGTGAAAAGAAAGAGGAGTAAAATCCACTTTGAACTTATTGTTTTTGAGCACACGCGATCAAAGATAATAAATAATTATTAAGCTTTAATAAACAGTTCCAGTGAAAAATAAACTGAATTTCACATCACACGAAGCGAAGGGTCTCCTTCCAAATATCGTCTGTCCACAAGAAGATAATTTAAATACTATAATGGTTATGCTGAATATTTTCAAGACGTCCCTCTCTCGCTCTGTCCGTCTGTCTGACACTTCACACACTAACCGGCACGACGGAAGGTGTGAAAGGACAAACACGCTGACACGATAGTTGTGGGCGGACACGCTAGCTACTGCACCAGCTTCGTCGTAGAGCGGGCGGGCGGGCGGGGCGGGCGGGAGGGGAGGGCCTCTGCCTCACACAGGGGGCGGGCCGGCCTCCAGAGAGAGGTGAGGGGGGTGCGGGGGTTCAGGTGTTGACACGTCACGTGGTAGGCCTTGGCGTCCGCCTGGTAGATTTTTCACACCTTGGCCACCGGCTCATCCAGTATCATTGTGTCCGTGCATCGCATTCACATCACTGGCGTTATCCATAACCGTCAACGAACCAAACACACGCACACGTGATTCCCAACTCGAACAAT 0 2 3' arm Aplysia_californica mirnest 100 100 -67.9 ........((((((((((((((((((((((((((((...((((((((.((..(((......))).))))))))...(((.((...((((......((((.((.((((....)))).)).))))...)))))).)))..))..)))))))))))))))))))))..)))))))....... (-67.9)