mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTTTTGTTTGGGTTTTTTTTG AAAAACATAGAACTTACAG GTGGTGTTTTTGTTTTGTTTGGGTTTTTTTTGTTTGTTTTTCAAACGAAAAACATAGAACTTACAGTGGGTAAA CATCTATGTCGGGTGCGGAGAAAGAGGTAATGAAATGGCAGGATGCCTAGTGGTGTTTTTGTTTTGTTTGGGTTTTTTTTGTTTGTTTTTCAAACGAAAAACATAGAACTTACAGTGGGTAAAGTCACAGAATATCACCTCAAAATGTTTATCAATCACATTTGAAAAAGCACTTTGACTTAGGTTCGTCTTTTACTAATAAATGGAGTGAGAAGAAATTAATAAAGAATTAAACTAGCGCAGCTTACCAAAAAAAACAAAGAAGAAAAAAAAAGCCGGCACAAAAAAGGAGGAGAGACTGAATTTTCCGGTACTCGCATTTTTTTCATCTTTCATGTTTCATTGATGTTTTTTTCTTGAATCATTTACCCCTTCACTGCCTGTCCTGAGACTGTCTCAGGCTCTGTGGTTGGACTATGAAGCAGGCCCGGGCGTAGAAGCGCATACTTGAGCTGCATAAATGCCAATGCTTACCACTACAAAAAGAGAGAAATCTTCACGATTGATCTTTTAAATAGTTATTTTACAAGTCTTCATCACACTCACCATTGCTTGCTGTTCACCCCGAGCCCTTCCTTCCTACAGTCGTTTCATACCACACTATCTGTGCTACCTCCCAGTATCTAGATTTTTATCCAGAATCTAAACCCAGGTTGGCCCTAGCAGGCAGGTCCAAAGCCCGTTTCCCCAACTGATATAAAACGTGTGGATGGGGGAATTATAAAACTACATTTTTTGCATTGCATTATGTTCATTACTCATCATAATATGGTGTCGGTAGAGCCGTCTTTTAT 4 2 5' arm Aplysia_californica mirnest 100 100 -15.3 .........((((...((((..((.(((((((((((.....))))))))))).)).))))..))))........ (-15.3)