mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACATACTTCTTTACATTCCA GGATAGCAAAGAAGTATGTTAC GTTGACTTGTCTGGCACACGATACATACTTCTTTACATTCCATAGCTTGAGCGTAATATGGGATAGCAAAGAAGTATGTTACGTGCACCAGCACATTTCT GAATTGATAGTATGCCGAAATTCATTTGTAATTTTAAGCTGTGTTATCCATTAACATAACTGGACCTTCTTTTAATATGTAGATGTGTGGGCTATAGACGCTCCACTCTAGATCTAGGTCTTTAAGTCAACTCGGAGAGCTTAAGAATGTGGGTGTAATTGCTAACATTTAGATAGAGAAAAGAAGGAGACGAAACTGGGGAGTGGGATTTAAGAGGCTGAACCCAGTCTTTAGAAGTAATACTTTTGGAACAAAGTAAATCCTGAATTGAGACAAATGGCACAATAGGACTTGAATCACTGTTAGTGATGGACTCGACGACAACAAAAACCAAAACGAAACGAAATAAGGAACGCATATCCTTAAGTAAAATGAACATTGTAGAAACTGGTGAGCCTCAGCAGCGTTCATTGAGACAGGCCTAAGTCTTGAGTCAGATCTTGGTCAGCTTGGAATTGTTGACTTGTCTGGCACACGATACATACTTCTTTACATTCCATAGCTTGAGCGTAATATGGGATAGCAAAGAAGTATGTTACGTGCACCAGCACATTTCTCTTGTCGACTTCATGTAGTCCAGATGGCGACGGCTTGAGGATGAAAGGTCAGACCTGGTGTAATAAGAGCTTCATCATACTGCAAAGTATAATCTGTTCCAAATACATTTTCTGTGACAGGCTGGTTTATATCTACTTTGCGAAGCAAACATTCGAAGTTTCGTG 3 1 5' arm Aplysia_californica mirnest mir-1 0.00000002 tgu-mir-1-1 0.000000001 -31.8 ...((..(((((((..((((..((((((((((((..((((((((............))))))))...))))))))))))..))))..)))).)))..)). (-31.8)