mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGCTGGTTGAAGGGGACCAA GGTTCCATTTTACCAGCTTTA AAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATATGGTTCCATTTTACCAGCTTTAGCAAAGCA TCATCAAAGCATAGCTACAGCTGGTTGAAGGGGACCAAATCCATTCAAGAGGTGATATGGTTCCATTTTACCAGCTTTAGCAAAGCATTGTGGATCACACTTTCCGGGGACAGGTGCGGTAACTTGGTTGTAAAGCGCTCTCGCGATACAGCCCGGCCTATAGATAGTTGTCTTACCAGCAGTCTGCATAGAAACCCACAGTGCAAAATAAAAAGGAGTGGCTGCATCTTTAACCACACTTTTCAAAACCGTAGTCGACAGGCTTCACGTTTACACTCAGACAGCCCCATCCATCTCTTTTACTGCTCACTTTCAATCTGTCTGACGCATACTTACATATAGCATGCC 4 0 5' arm Gadus_morhua mirnest mir-133 5e-24 dre-mir-133a-1 5e-36 -33 ..((...((((.(((((((.(((.(((((((.(((...((....)).))).))))))).))).))))))).))))...)). (-33)