mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTCTGTGTGCATGTTGCT CACATGTAAAACTAATATATA GTGTGTGTCTGTGTGTCTGTGTGCATGTTGCTATCTTTGTAAGAGCACATGTAAAACTAATATATATATCTTT CATGAACTGAAAGAATTTGCAGTCTTGCAATCATAGATCATTAATATACACTACATCATGTGCCTACAGAGTGCCGTCCAAGGAAAGGTAGGACTTTAACGGAAAACTTTTTGCACTGTGAACGTATACATATATATACTTTTTTTTTTTCATGTATAGTTTTGCATATATCTTTGGGGATCGGACCCCAGTTGCTTCCCTTTCCCAAAGTCACACCCTCTTTCTCCTTCACTCTCTGACTCGACTTCAAACCGAAATCAAGAATTCAGTCGGCAATGAAATATATTGAATTTGACAAGTTTTCTGGAGGATGGCTTTTTTATTATTATTATTTTTTTATTATTTTGGGGTGACCTAATTGTGCGTTCCCCCCTGGCTGTTCCCGGCGCCTTGTAACTCACTCACAGAGACTCCTGGAACCTCTTCATTTCTACATTCAAATTATTCATCATCTTCTTTTCTTTTCTTTCCTCACTTTTCATACCTTTGGTGTTCTCTGCGGGGATTTGAGATGAGCAAAAAAAAAAAGTGGTGCTTTGTTGTTTCTAGTTTTTTTTTCTTTTTTTTCTCTTCACAGAGCTATTGTTGAAACACCTTACGTCTCTGGTGTACAGGAGAAACTCCGGTGATAGACAGGGCTGCCCTATTTACAGCCAGAATCACACAGCAAGACGATATGGTGATTGTCTATGACATTTTACAACTGATTAAAGTGAGATACGTTTTAATAGGAAGCATCGGTGCTGACGTGTGTGTGTGTGTGTGCGTGTGTACGTGCACGTGTTTGCGTGTGTGTTTGTGTCTGTGTCTGTGTCTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGCATGTTGCTATCTTTGTAAGAGCACATGTAAAACTAATATATATATCTTT 3 2 5' arm Gadus_morhua mirnest 100 100 -14.9 ......((.(((((((..((.(((((((.(((...........))))))))))..))..))))))).)).... (-14.9)