mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATAGTTTTGTTTGGTTTCTC GAGGCTAAACAAGAAATTAC CCGAATTCGGCACGAGGCTAAACAAGAAATTACAACATATATTGCGACAAACGGTATTTAACCAGAGAGAGCCATTCCTGGGTTATAGTTTTGTTTGGTTTCTCTATAATGTAG TGCCGAATTCGGCACGAGGCTAAACAAGAAATTACAACATATATTGCGACAAACGGTATTTAACCAGAGAGAGCCATTCCTGGGTTATAGTTTTGTTTGGTTTCTCTATAATGTAGGCTTTCAGCATCATGAACTACACCCTTTCTCCGTGTCTGAAATACAGCGACTACAATTTCTTTACATAAACATATCTGAAGTAAGCATTCTGGTTCATTTGAAGCAAACCTTTTCATTACATGTTCATTAAATGACATCCAGCAATAAAAAAAAAAAAAAAAAAA 4 1 3' arm Gadus_morhua mirnest 100 100 -21.2 (((....)))...((((((((((((((.((.((..((...((.((.......(((.....))).......)).))...)).)).))..))))))))))))))............ (-21.2)