mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGTCGTCATCATCATCATCC GTGGTGGTGGTGGCGGCGGCC GGTTTGAGCCTTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCCGCCAAGGCGGTGGTTTTAAGATGCATCATGTTTCAAAAGGTGGTCCATATGCTAGGATTTTGACTGCTAAAGATTTCCCTTCTTCATCATCATCTTCATCGTCGTCATCATCATCATCCTCACCATCTTTAAGCAAAG ATTTTCCCATTTCTCTCTGCCTGCAAAAATCCCACATACAACCTTTTACTTCCATTTGATCATTTTTCTTCTCCTCTTTGAACCTAGGACCTGGGGGTTCAGTTTTAAATGCAAGGTGGTGGCGGCGGCGGTTCTGAAAGTGGGTCAATGTCTACAGTGTCAAGGGATGAGAACATGGTGGTGTCTTCTGAAGATTCTTCATGCCCGGATGAGTCTGGGTTGGAGTTGGGTCTTGGTTTGAGCCTTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCCGCCAAGGCGGTGGTTTTAAGATGCATCATGTTTCAAAAGGTGGTCCATATGCTAGGATTTTGACTGCTAAAGATTTCCCTTCTTCATCATCATCTTCATCGTCGTCATCATCATCATCCTCACCATCTTTAAGCAAAGCTAATGTCACAGCTGGGACCAAGAGAACTGCTGAATCTGTTGCTGTTGCTGCTAACGGATCTAGTCAAGTTGTGGGGTGGCCTCCTATCAGAGCTTATAGAATGAATAGCATGGTTAATCAAGCAAAAGTGCTGACAATGGAGAACCGCANAAAGGAGACCTCGATGGTCGAGAACAGCAGCATCGGCGGCTATCGTAACGATGGTAACACTAAGCTGAAGAAATCCACGTTTGTGAAGGTGAATATGGATGGAACCCCAATAGGAAGGAAGGTCGATCTGAATGCCCATGAATCGTATGAAAAGTTAGCGAAAACGTTGGAAGATATGTTTCTCGAAACCGGCCCGAATGTCAATCCATCTTGATCAACCGCGCTGCAGCTTTGTTTGTTGAACAAGATGACAAGACACTCGAAACTGCTGAATGATCATCCGATTTCTGGC 2 0 3' arm Gossypium_arboreum mirnest 100 100 -55.8 (((....)))..((((((((.(((((((((((((((((((((((((.....))))))...((((((.((.(((......((((.((((.....((.((........))))....))))..))))...))).))))))))...))))))))))))))))))).))))))))........... (-55.8)