mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCTGCCAGCTGAAGAACTG GTTCTTCACTGGCAAGCTTTA CTGCACAACGCTGGCATGTGGCAGTTCTTCACTGGCAAGCTTTACGTTCCTGTTGTACTGCTAAAGCTGCCAGCTGAAGAACTGTCACGGTCTGCACTGCATCC GGGACATCTGAGCCTACTTCAAGGGGAGCGATATCCGTTTCGGTAACATGGGTTTAGTGGTAAGAGAGGGGGCGGGACTGCTTATTAGTCCTTAACTGGTGAACTCTGTAGAGAGCCATTCTTCAGGGTAAGGGGTCAGAGGTAAAGGCACAGCAGGAGAGGTTGAAGAAGTGCTGTTGGAGGCCAGGGCAGCAGAAGGGAATTTCTCACATATGCTGCTGGAATGTCAGGAAATGTTACGGAAACCCGGGGCGGACACGCCTAACCCCACACCTCACCCGACTCCTCACCGTCTCAAGGCTTTCCTTCTTTCTCATTCCCCTCACACTCTCAGTCTTTCACCCTCTCACTCACCCTTTGGCTCACCCGTTCTGACTGTGGTCTCTCTCTGCAGGTCTGTAGGCAGCAGAGGATTCAGCCCCTACTTCTACCAACCAGATGATCCTTGTGAAGTCTGGTCCTCTTCTAATGGCTGACTCCACGCACCATCGAGTACGCCCTGGTCTGCACAACGCTGGCATGTGGCAGTTCTTCACTGGCAAGCTTTACGTTCCTGTTGTACTGCTAAAGCTGCCAGCTGAAGAACTGTCACGGTCTGCACTGCATCCCCTGAAGGAGGGTCCCCAAGAGACGGTCCGCACTGCGTCCCCCCAGGA 0 2 3' arm Gadus_morhua mirnest mir-22 0.0000000001 dre-mir-22a 0.000000000001 -43.9 .((((....((.(((.(((((((((((((((((((((.((((((.((....((...)).)))))))))))))).)))))))))))))))))).))..))))... (-43.9)