mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTCTCCTGGCCCTCCTTCCT GAGGGAGGCCAGGTAGACCGC TTGCCCTCCTCCTTCTCCTGGCCCTCCTTCCTCTCGGCGTCGCGGTTGGAGATCTTGTTGTTGATCAGGTTGTGTAGAGCCACCACCGAGCGGATGAGGGAGGCCAGGTAGACCGCAGCATCTG AACTGGAAACAAAAAACTTTAATAGGTTGGATTTATTTAGCGAATACCAGAAAAAAAAAAAGCCATTCTTTACAAAAACAAAAAAAAAGAGGTGCTTTACATCAGCGAGAAGCCGACTTATGAAAACCGAATGGACGTGATTCCATAGCAAAAGACACCAGACCCTCGCAGCCCATCTTCTTCCACACAATAACAGTCCTGTGAGCGCAGTTCGTGACCTCGAGGCAGAATCTCAAATGACACCGTTCCTCATATAGAGTGCTACTTCTATTTCCAGAGCCACATGTACAGACGCAGACACGGCCCAGGAAGCGGAGAGTAGAGCACCGTGCACGAGGAGAGCGGACAATTTGAGATGCGGCCGTAGAAAACGACAAACAAATCATTTTTTCCTCTTGTCGTCTTTGCTGGTGGTGTCCCCCTTCTCCTTGTCGTCCTTCTTCTCCTTGTCATCCTTCTTCTCCTTGTCGTCCTTCTTCTCCTTCTTGCCCTCCTCCTTCTCCTGGCCCTCCTTCCTCTCGGCGTCGCGGTTGGAGATCTTGTTGTTGATCAGGTTGTGTAGAGCCACCACCGAGCGGATGAGGGAGGCCAGGTAGACCGCAGCATCTGGTCGTTGGTCTTCAGGTAAAAGGCCTTGGTGAACTCCAGCAGATTAACGTCTGGAAGGAGGTTGAAGACGTCTTGTAGGTGGTAGATGATGGGGTGGTTGATGGGCAGCTTTCCAGCCACCACTCTCTCCAGGTAAGAACCGGGATGTCTAAGCAGCTTGGAGTTCAGTCCCTTCAGGCCAGCACCTGGTTGGTGATGCGCTG 3 2 5' arm Gadus_morhua mirnest 100 100 -39.1 .............((((((((((.((((((.(((..((....((((.((.((((........)))).((((......)))).)))))).))))).))))))))))))).)))............ (-39.1)