mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTGTGTGTGTATGTCCAG TGTTGTATACACACACACACG CACGACAGCCGTGTTGTATACACACACACACGTGTGTGTGTGTGTATGTCCAGGCCTGATAA CACGACAGCCGTGTTGTATACACACACACACGTGTGTGTGTGTGTATGTCCAGGCCTGATAATAGTTTGACCCAGTCCGTTAGTCAGTCGATTTGTTTGCGTTTCAAGCAGCCAGTTCTGGCCATACTGCCAAAGCCGAGCTGTTTGAATGTCCTGGTCGGTCGGTCGGTCGGCCGGTATTTCTTCGCATGCATTCCACTTTGCTCGCCCCGTGCGGTTGTCAGCTCTGCAGTCTACCTGCCGGCGTGATGGTCCGTGTTTTGGTCTACCTGCACACCTGCCGCTGTAATTGTCCGCTCTCTTGTTCGTACTCCACGCGGCGCGCCTATCAGTATTAGCCGTCTCTGTGAGTATAAACAAAACGTGTCCGTCTGCCGAGACGTTTCTGATGCTGTTTTGTAACCAGATTTGATGCTAGAATAAATGAAGCGGTGTAAATAATTAGAAACGGGCAGGTACACGGCGTCACCGGTGTGGGCCAGAAGCCATTCTTGTATAAATTCGGCAATTTTCGTTTTTTTTTTTTTATTCTGCCGTCTGAGCCGTCGTGCGTACACTTGCCTGACTGTCTTAGCGCCGGCTCGGCGGTATTAAGTGGCAAATATATCGGCTGATATCAGCCGGGCCGGGCTGCCGTCTGAGTT 5 0 3' arm Alvinella_pompejana mirnest 100 100 -25.5 .....(((((....(((((((((((((((....)))))))))))))))....)).))).... (-25.5)