mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTTTTTGTTTTTTGTTTTG TTACATAGAATGAGAGAAAAA GTTTTACAAATTTTTTTTTGTTTTTTGTTTTGTTTTGTAACCTTATGGCATTTCTTACATAGAATGAGAGAAAAAAATAAACC ATTATCTTGATTGATGTTGACATATTTGAAGAGTGTTTGCTTTTTTTTACTATATCAAAATCATTTTTAATCCATGTTGCTCAAAAATATTTTTGTCCAAGTTTTACAAATTTTTTTTTGTTTTTTGTTTTGTTTTGTAACCTTATGGCATTTCTTACATAGAATGAGAGAAAAAAATAAACCCCCCACTAATAAAAGATGACCCATTCAAAAGGGGGGGTGACAAAGTAGAACAGTATTTTTTCTTATTTATCCATGTTACTAGCTAACAGAAAAACAGAATCATTTATGTTCATGTGTGTTTCTATGTGCGTGTGTGTGTTCGCGAGAATTCTTTCCTGAAAAAAATAGTAGCTAGGCACAAAATGATTATGAACCCTTTTTTTTCTATAAAAAAAGAAAGAATATTGTTTTATCCATTGTAAGCATTTTAAATGCATTTCATTCTTATTTCCTAGTTCTTTTATATTTGTACTTAAGTCTCTGTATTCTTCTCTTTTTTTGCTCTGGAAAGCACTTATGTATACAGGCATTTGGATAACAGTTTTCGTTATTATTCGTTTTGGGGGGAAGGGGGTTTCTTTATCAGANACCAAATTGTTTTCATTCGTTGTTATTCGTTTTTCTTATCCTGTCCTCATTCTTATTCTTTAATAAATGTGTGCATAGTAAT 5 0 5' arm Schistosoma_mansoni mirnest 100 100 -12.8 ..........((((((((((((((.(((.......(((.........)))......))).))))))))))))))......... (-12.8)