mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTCATTGGAGGATTTGAGAA CTTCGGTTCACCAGCTCGACGGG GAGGTCTACGAAGTCATTGGAGGATTTGAGAATGAGGGGAAGCAACCTCGCATCTCTCCTCTTTTCTTCGGTTCACCAGCTCGACGGGAAGTAGCG TTTTTTTTTTTTTTTTTTTTTTTTTAACAGAGCACATAGTTTAATTGAAACAAATATATGTTGAGTACATTTTCAATCCCAATCCGGTCGAAGTCAAAAGTCCAATCCCCCGGCTACACCCGTCAGCATTAAGTACATCCGCCAAGGGAATCTCCATGTCCACAGGTTCCCTCGGGGTCCCTTTGCCATCCGTCCCAAACATGGTCGACCAGGCCCACATTCCTCTCTCCACGACCAAAGTTCACAGCTGCAGCTTGCCGCACTTTGATGCACTCATCGTCCAGGCGCAGGCACTTGTCAAATGGCGATTTGCAGGCCGCCTCCACTAGTACGCCGGCAGTACCCCGTGGTTTTCCTTAAAGGGATACTGAACCGAAATTTGGATTTCGCAAAATAAAGCCGCAGAAGCGTTGAACGGGACGCTACAAACTCCAAAACATCACTCGTACATCGACATCCCAAACGAACGGCCGCACTTTCGGAAACGAAGGGCGCGATCAAGCGAGGTCTACGAAGTCATTGGAGGATTTGAGAATGAGGGGAAGCAACCTCGCATCTCTCCTCTTTTCTTCGGTTCACCAGCTCGACGGGAAGTAGCGAGGAGGAGAAAGAATGAGAATCTTTTGTCTCGTTGACCGTGTTCAATCGCGCACTTCTTTTCCGAAAACACGGCGATCCAGTAGAGATATCGCTGTAGGAGACGTTTTTGAGCTCTGTAGCGTCCCGCCTATCCGTCTAGCCCTGTTTTGGGGAGCTCGAAATTTGGTCAATATCCCTTT 4 2 5' arm Ixodes_scapularis mirnest 100 100 -29.6 ...(.((((...(((.((((.(((((.(((((.(((((((.((......))...)))))))..))))).))))).))))...))).....))))). (-29.6)