mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCTGCTGCCTGCCTTTTGGC CATGGGGCAGCGGCATTATC TACAGCGAAAGTCATGGGGCAGCGGCATTATCACAAGTCATCTGTTACGATCATGAGCTCATCATTTCACCACCTCTACAGTGCTGCTGCTGCCTGCCTTTTGGCTGGTTGAGT GAGGCAAGCTCTCCGACGAGGACAAGAAGACTATTGAGCAAGCTGTGGACGAGAAAATCAAATGGCTGGAGCAGCACAGTGACGCTGATGCGGAAGAACTCAAGGAACAGAAGAAACAGCTGGCTGATACTGTGCAGCCGATTGTAGCCAAGCTGTACCCTGCAGGAGGCACCCCACCGCCGACGGACAAAGATGACTCTACAAAGGACGAGTTGTAAAAACAAGGCCAGATCTCTTGGGTACAGCGAAAGTCATGGGGCAGCGGCATTATCACAAGTCATCTGTTACGATCATGAGCTCATCATTTCACCACCTCTACAGTGCTGCTGCTGCCTGCCTTTTGGCTGGTTGAGTGTTCTTGGACCTATTTACCATGATCATTCTCTGTACAAAAACAATTCTTTCTGTGTTTTTTTTTTTTCGTTGTATTAACTTAANTTNATACAAATTTCTTCTACTGGGTGGGCTTTCTCCATGATTGGGAGGGGGCTGGGTGTCAAATAAAAGTGTTTCTATCGAAAAAAAAAAAAAAAAAAAA 2 1 3' arm Ixodes_scapularis mirnest 100 100 -30.5 ..((((...(((((.((((((((((((.((.(((..............((..((((.....)))).))............))).)).))))).))))))).))))).))))... (-30.5)