mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGCTGCTGATGCTGGC CGCAACACCACCAGCAGCGG CGTCGGTGCCGCAACACCACCAGCAGCGGCCACCACCACCCAGTCCGCTGCTGCTGCTGATGCTGGCGCCACTGCC CGTCGGTGCCGCAACACCACCAGCAGCGGCCACCACCACCCAGTCCGCTGCTGCTGCTGATGCTGGCGCCACTGCCGCTGCCACCGCCACTGCTACTGCGTCGCGTGCTTTCCCTTCCCCGGACAGGACCGGTCTCCCTCCTCACTCCTCCTCCCACCCCTCACTCCCGGTCGGACCCCACCCGCGGTCGGCCCTTGCCACCGCCGCGGTTCGTGGCGGCGGCGGCGTCTTGACCGCGGTCGACGGGGTCTCGACGTCCCCTTTCGTTTCTTTGTCTGCGCCTTTCTCTCTCTCTATGTTGTCGTTCTTCTGTCGTGTCCCTTCCTCTCTTCTTCGGCTCGGTTGCAGACGCGGTTTTTAGCGAAAGGAGAGAGAGCGCGGGGTTTACGTTTGTGCGGTTCTTAAAGAGACTCTCTTTTTTGGCACGGACACGAGATTGGGCGGACAGAGGGGGGTGGGGTCTCGGGGTTTGCCTGTGGAGTTTCGGAAAGGGTCGTAGTAGTTCGCCAGGAAGTAGGTAAAAACTCTTCCTCCATTTTTGTTGCCTCTGGTTTTTTTTTTTTTTTTACTCGAGAGGGCTGTTTGAAAGAGATGGCTTTTTTTTTAACCTCCTCCCAGAAAGGATTTTTTTTTTTTTTTTTTCAATAGCTTGTTCCTGCTTTTTGACTGTCTGGCCCCGCTCTTTTTACACATTATTTTTTTCTCGACTTTTTTTGTAACAGCTC 3 1 3' arm Ixodes_scapularis mirnest mir-598 0.0002 100 -32.7 ....(((((((((.((.((.((((((((((............).))))))))).)).)).))).))))))...... (-32.7)