mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGCTCTCTATTCTTCTGTCA ACAGAAGATAGAGAGCACAG ATGCTGTTGACAGAAGATAGAGAGCACAGATGATGAAATGCATGAAAGGAAATTGCATCTCGCTCCTTTGTGCTCTCTATTCTTCTGTCATCACCC AGGAACGAACCATATATCTTCATTCTTTCTCTCTGAACTTCAAAAGCAACCCTATTTGGAGTTTTCATCTTCATTTGGTTTTCTCTGTCACCTTTTTTTTCTTTCTTTCTCTGATTATTCATTTTCCATGAACAGAGGAGGTGTTGGTGATGCTGTTGACAGAAGATAGAGAGCACAGATGATGAAATGCATGAAAGGAAATTGCATCTCGCTCCTTTGTGCTCTCTATTCTTCTGTCATCACCCTTTTGTACCTTCCCTCTCCTACGTTATTATTTCATTGTTATCTTTTCTGTGCTTTGATTACTTTTTAACTGTCATTTGTTCCTTATTTACATCTACTGTGACATATAACAGAAGATACGATCATACGAGGATTGAGGTTGTGGTTTTTTTTTTTTTTTTTTTCATGATTCCTTTTTTTCTTATTATTTGAACACACTTCTTCTAGCTTGTTCTTGTTGCTGTGTTGGTGATGCTGTTATATATGCATTATTACTAGCTTTCAGGGAGACTTATCAAATACAGATATCACAGTGGCAATGGCAAGTAAGAAGCTGAGGAGATAGACTACAGCATCTGTTATTTCTTTTTTTTTTTTTGGTTCAATCCATAATTATAATTTTTTTTTAATTTTAC 0 1 3' arm Vigna_unguiculata mirnest 100 gma-MIR156e 7e-36 -41.6 ....((.(((((((((((((((((((((((.(((((.(((((...........))))).))).)).))))))))))))).)))))))))).))... (-41.6)