mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGCTTCTCTTTGTTGGCAGG TGCCAAAGGAGAGTTGCCCTG AATCACTCATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGATCATCTCATGAAATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCT GGGTGCAACAGCAGTGAATAAGCAAATCACTCATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGATCATCTCATGAAATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCTTTAGCTTAACATGTAATCTTCTACGCTATTCGGTGCATATCATCATTCACTCCATTGAAGAGACCACTGAACCAGTATGCAAGGATCACACAAGTGACTTCGTCTTCTTCTTCTTCTTCTTTAGTTCCACAAGTTTTTATTTTTTTAAGGAAACATAATGTAACAACATAGTTCGATATAGTTGATGGATACATATGTTTCCTTTATTGTTCACTTGTAGAACACTTAAGGTAGAGAAAAACTTACTGAGATTATATGGTCTCATAATAACTCCAAGATGTTCTTCTTTGATTAACATATGATTTTGCAATTCAAGAATGCTTTCACTTTCTCTTGTATCT 3 0 5' arm Vigna_unguiculata mirnest mir-399 0.0000000000003 pvu-MIR399a 4e-34 -37.2 ........(((((((..((((((.(((((((((.((..(((((.....)))))..)).))))))))).))))))..)))))))....... (-37.2)