mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGCCAAAGGAGAGTTGCCCT GGCTTCTCTTTGTTGGCAGGA AAATCACTCATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGATCATCTCATGAAATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCTT GGGTGCAACAGCAGTGAATAAGCAAATCACTCATAGGGCTTCTCTTTGTTGGCAGGAAATGACATGATCATCTCATGAAATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCTTTAGCTTAACATGTAATCTTCTACGCTATTCGGTGCATATCATCATTCACTCCATTGAAGAGACCACTGAACCAGTATGCAAGGATCACACAAGTGACTTCGTCTTCTTCTTCTTCTTCTTTAGTTCCACAAGTTTTTATTTTTTTAAGGAAACATAATGTAACAACATAGTTCGATATAGTTGATGGATACATATGTTTCCTTTATTGTTCACTTGTAGAACACTTAAGGTAGAGAAAAACTTACTGAGATTATATGGTCTCATAATAACTCCAAGATGTTCTTCTTTGATTAACATATGATTTTGCAATTCAAGAATGCTTTCACTTTCTCTTGTATCT 3 0 3' arm Vigna_unguiculata mirnest mir-399 0.0000000000003 pvu-MIR399a 1e-34 -37.2 .........(((((((..((((((.(((((((((.((..(((((.....)))))..)).))))))))).))))))..)))))))........ (-37.2)